PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G216000.1.p
Common NameGLYMA_01G216000, LOC100789097
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 227aa    MW: 25423.2 Da    PI: 4.7231
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G216000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-1961111155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  +++Wv+e r+p++   + r++lg++ t+e+Aa+a++ a+++l+g
  Glyma.01G216000.1.p  61 PVYRGVRRRN-KNKWVCEMRVPNN---NSRIWLGTYPTPEMAARAHDVAALALRG 111
                          68*****888.7*********944...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-1461111IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-2162121IPR016177DNA-binding domain
PROSITE profilePS5103221.39162119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2962121IPR001471AP2/ERF domain
SMARTSM003809.6E-2762125IPR001471AP2/ERF domain
CDDcd000184.95E-2863121No hitNo description
PRINTSPR003671.6E-76374IPR001471AP2/ERF domain
PRINTSPR003671.6E-785101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0016049Biological Processcell growth
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MNIFKSPLDH DLNCGGIFHD SAEASYSSET RSTPSDEEVI LASARPKKRA GRRVFKETRH  60
PVYRGVRRRN KNKWVCEMRV PNNNSRIWLG TYPTPEMAAR AHDVAALALR GKSACLNFAD  120
SRWRLTVPAT TNAEEIRRAA GEAAEAFAVA DGDDVNIDQQ QSVMATNDDE VQEPLQQEEV  180
QDLHDLLLSI ANEPLMSPPP CARDGRDWND VDIFDDDEIS LWNFSI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.373650.0flower
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00137DAPTransfer from AT1G12610Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU3705530.0EU370553.1 Glycine max cultivar Stout CBF3 protein gene, promoter region and complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517455.11e-168PREDICTED: dehydration-responsive element-binding protein 1E
SwissprotQ9LN862e-59DRE1F_ARATH; Dehydration-responsive element-binding protein 1F
TrEMBLB3TPR91e-168B3TPR9_SOYBN; CBF3 protein
STRINGGLYMA01G42500.21e-168(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.14e-40ERF family protein
Publications ? help Back to Top
  1. Pennycooke JC, et al.
    The low temperature-responsive, Solanum CBF1 genes maintain high identity in their upstream regions in a genomic environment undergoing gene duplications, deletions, and rearrangements.
    Plant Mol. Biol., 2008. 67(5): p. 483-97
    [PMID:18415686]